Welcome to a dessert experience that combines two of the most beloved treats into one perfect bite. These Brownie Cheesecake Cups feature a rich, fudgy brownie base topped with a smooth, tangy, and incredibly creamy cheesecake layer. It’s the ultimate dessert hybrid, guaranteed to satisfy every craving.
Whether you’re looking for a show-stopping dessert for a party, a sweet treat for your family, or a simple indulgence just for you, this recipe is the answer. It’s surprisingly easy to make and delivers a professional-looking result every time. Get ready to discover your new favorite dessert.
Why You’ll Love These Brownie Cheesecake Cups
If you’re a fan of rich chocolate and creamy cheesecake, this recipe is a dream come true. The contrast between the dense, fudgy brownie and the light, airy cheesecake is simply irresistible.
- Perfectly Portioned: Individual cups make serving a breeze, perfect for parties and gatherings.
- Incredibly Decadent: The combination of deep chocolate flavor and tangy cream cheese is pure bliss.
- Easy to Make: With simple ingredients and straightforward steps, even beginner bakers can achieve perfect results.
- Make-Ahead Friendly: These cups are an ideal dessert to prepare in advance, saving you time on the day of your event.
The Key Ingredients for Success
The magic of these brownie bottom cheesecake cups lies in using simple, high-quality ingredients. Here’s what you’ll need to create this masterpiece.
For the Fudgy Brownie Layer
- Unsalted Butter: Melted butter provides the richness and fudgy texture that makes these brownies irresistible.
- Granulated Sugar: Sweetens the base and contributes to that classic crackly brownie top.
- Large Egg: Binds the ingredients together for a perfectly structured brownie.
- All-Purpose Flour: Just enough to give the brownies structure without making them cakey.
- Unsweetened Cocoa Powder: The source of our deep, rich chocolate flavor.
- Salt: A pinch of salt enhances the chocolate and balances the sweetness.
For the Creamy Cheesecake Filling
- Cream Cheese: Use full-fat, block-style cream cheese, softened to room temperature for a lump-free filling.
- Granulated Sugar: Provides the perfect amount of sweetness to complement the tangy cream cheese.
- Large Egg: Adds richness and helps the cheesecake set beautifully.
- Vanilla Extract: A splash of pure vanilla extract adds warmth and depth of flavor.
For another treat that’s perfect for sharing, check out our amazing Buckeye Bars Recipe.

Step-by-Step Instructions
Follow these simple steps to create flawless Brownie Cheesecake Cups. We’ll walk you through each part of the process, ensuring a perfect bake every time.
Step 1: Prep Your Pan and Oven
First, preheat your oven to 350°F (175°C). Line a 12-cup standard muffin tin with paper liners. This prevents the cheesecake cups from sticking and makes for easy cleanup.
Step 2: Make the Fudgy Brownie Batter
In a medium bowl, whisk together the melted butter and granulated sugar until well combined. Add the egg and whisk vigorously until the mixture is glossy. Stir in the all-purpose flour, unsweetened cocoa powder, and salt until just combined. Be careful not to overmix; this is the key to a fudgy texture. Distribute the brownie batter evenly among the 12 muffin liners, filling each about 1/3 full.
Step 3: Create the Creamy Cheesecake Filling
In a separate bowl, use an electric mixer to beat the softened cream cheese and granulated sugar until smooth and creamy. Scrape down the sides of the bowl to ensure there are no lumps. Beat in the egg and vanilla extract until just combined. Again, avoid overmixing, as this can incorporate too much air and cause the cheesecake to crack.
Step 4: Assemble and Bake
Spoon the cheesecake filling evenly over the brownie batter in each liner. The liners should be about 2/3 to 3/4 full. Bake for 22-25 minutes, or until the edges of the cheesecake are set and the center is almost set (it should have a slight wobble). Let the brownie cheesecake bites cool completely in the muffin tin before transferring them to the refrigerator to chill for at least 2 hours. Chilling is essential for the cheesecake to fully set.
If you love simple, decadent desserts, you should also try our recipe for Tiramisu Cups.

Pro Tips for Perfect Cheesecake Cups Every Time
Unlock the secrets to flawless brownie cheesecake cups with these expert tips.
- Room Temperature Ingredients: For the smoothest cheesecake filling, ensure your cream cheese and eggs are at room temperature. This helps them incorporate easily and prevents lumps.
- Don’t Overmix: Overmixing the cheesecake batter can cause it to puff up in the oven and then crack as it cools. Mix until just combined for a dense, creamy texture.
- The “Wobble” Test: To check for doneness, gently shake the pan. The cheesecake should be firm around the edges but still have a slight jiggle in the center. It will continue to set as it cools.
- Cooling is Crucial: Allow the cups to cool gradually at room temperature before moving them to the fridge. This slow cooling process is another key to preventing cracks.
Fun Flavor Variations to Try
While this classic recipe is a winner, feel free to get creative! Here are a few ideas to customize your Brownie Cheesecake Cups:
- Chocolate Chip: Fold mini chocolate chips into the cheesecake batter for an extra chocolatey kick.
- Raspberry Swirl: After adding the cheesecake filling, drop a few small dollops of raspberry jam on top and use a toothpick to create an elegant swirl.
- Peanut Butter: For a delicious twist, try our Peanut Butter No-Bake Cookies or add a swirl of melted peanut butter to the cheesecake top before baking.
- Oreo Crumble: Sprinkle crushed Oreo cookies over the top before baking for a crunchy, cookies-and-cream flavor.
How to Store Your Brownie Cheesecake Cups
Proper storage is key to keeping your treats fresh and delicious. Store your cheesecake cups in an airtight container in the refrigerator for up to 5 days. You can also freeze them for longer storage. To freeze, place the cups on a baking sheet in the freezer until firm, then wrap them individually in plastic wrap and store them in a freezer-safe bag for up to 3 months. Thaw in the refrigerator before serving.
Frequently Asked Questions (FAQs)
Definitely! These are a great make-ahead dessert. You can prepare them up to 2 days in advance and keep them chilled in the refrigerator until you’re ready to serve.
Yes, you can use a boxed brownie mix in a pinch. Prepare the batter according to the package directions and fill the muffin liners about 1/3 full before adding the cheesecake topping. However, our homemade brownie recipe is specially designed for a rich, fudgy texture that complements the cheesecake perfectly.
Yes, absolutely. Because of the cream cheese-based topping, these cups must be stored in an airtight container in the refrigerator. They will stay fresh for up to 5 days.
The cheesecake is done when the edges are set and firm, but the center still has a slight jiggle or wobble when you gently shake the pan. It will finish setting as it cools and chills.
To prevent cracks, make sure your cream cheese and eggs are at room temperature. Also, be careful not to overmix the cheesecake batter. Finally, allow the cups to cool gradually on the counter before refrigerating.
The Best Brownie Cheesecake Cups Recipe

Brownie Cheesecake Cups: The Ultimate Fudgy & Creamy Treat
Ingredients
Equipment
Instructions
- Preheat your oven to 350°F (175°C). Line a 12-cup standard muffin tin with paper liners.
- In a medium bowl, whisk together the melted butter and 1 cup of granulated sugar. Add 1 egg and whisk until glossy. Stir in the flour, cocoa powder, and salt until just combined. Do not overmix.
- Distribute the brownie batter evenly among the 12 muffin liners, filling each about 1/3 full.
- In a separate bowl, beat the softened cream cheese and 1/4 cup of granulated sugar with an electric mixer until smooth. Beat in 1 egg and vanilla extract until just combined.
- Spoon the cheesecake filling evenly over the brownie batter. Bake for 22-25 minutes, until the edges are set and the center has a slight wobble.
- Let the cups cool completely in the muffin tin at room temperature. Then, transfer to the refrigerator to chill for at least 2 hours before serving.
Notes
Avoid overmixing both batters to ensure a fudgy brownie base and a crack-free cheesecake topping.
Store leftovers in an airtight container in the refrigerator for up to 5 days.
Share Your Creations!
We are certain that these Brownie Cheesecake Cups will become a staple in your dessert rotation. They are the perfect blend of rich, fudgy, and creamy, making them an absolute crowd-pleaser. If you make this recipe, we’d love to see it! Share your creations and tag us, or save it to your favorite board on Pinterest.
